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Conferences with contribution
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Federated Conference on Computer Science and Information Systems (FedCSIS24).
Sofia, Bulgaria, September 8-11, 2024.
Web site.
W. Da Rocha, T.E. Malliavin, A. Mucherino, L. Liberti,
Impact of Local Geometry on Methods for Constructing Protein Conformations.
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Autumn Meeting of the Brazilian Physical Society (EOSBF24)
Florianópolis (SC), Brazil, May 19-23, 2024.
Web site.
M.G. Damaceno, N. Rubiano da Silva, R. Medeiros de Araújo, P.H. Souto Ribeiro, D.S. Gonçalves, A. Mucherino,
An Optical Processor for Matrix-by-Vector Multiplication.
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International Symposium on Grids and Clouds (ISGC24).
Taipei, Taiwan, March 24-29, 2024.
Web site.
A. Mucherino, J-H. Lin, T. Malliavin,
The Coherent Multirepresentation Problem in Protein Structure Determination.
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6th International Conference on the Dynamics of Information Systems (DIS23)
Prague, Czech Republic, September 3-6, 2023.
Web site.
A. Mucherino, J-H. Lin,
A Spectral Projected Gradient in non-Cartesian Coordinate Spaces: a Case Study in Structural Biology.
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6th International Conference on Geometric Science of Information (GSI23)
Saint Malo, France, August 30 / September 1, 2023.
Web site.
S.B. Hengeveld, F. Plastria, A. Mucherino, D.A. Pelta,
A Linear Program for Points of Interest Relocation in Adaptive Maps.
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Workshop on Constraint Systems: Distance Geometry, Structured Polynomials, Matrix Completion and Kinematics
Toronto, Canada, August 8-11, 2023.
Web site.
A. Mucherino,
Non-Distance Information in Distance Geometry (Invited speaker).
The video of the presentation is available on
YouTube
and it can be separated in three main parts:
the 1D case,
the 2D case with its application on adaptive maps,
and finally
the 3D case and its application in structural biology.
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10th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO23)
Gran Canaria, Spain, July 12-14, 2023.
Web site.
A. Mucherino,
The Coherent Multi-Representation Problem with Applications in Structural Biology.
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14th International Conference on Large-Scale Scientific Computations (LSSC23)
Sozopol, Bulgaria, June 5-9, 2023.
Web site.
S.B. Hengeveld, A. Mucherino,
Variable Neighbourhood Search in Hamming Space.
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Autumn Meeting of the Brazilian Physical Society (EOSBF23)
Ouro Preto (MG), Brazil, May 21-25, 2023.
Web site.
A. Mucherino, S.B. Hengeveld, N. Rubiano da Silva, D.S. Gonçalves, P.H. Souto Ribeiro,
An Optical Processor Specialized on Matrix Operations.
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International Symposium on Grids and Clouds (ISGC23).
Taipei, Taiwan, March 19-24, 2023.
Web site.
A. Mucherino,
Different Facets of Distance Geometry.
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ROADEF23.
Rennes, France. February 20-23, 2023.
Web site.
Two contributions:
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A. Mucherino, J. Omer,
The Referenced Vertex Order Problem: Recent Advances and Future Works.
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S.B. Hengeveld, T. Malliavin, L. Liberti, A. Mucherino,
Collecting Data for Generating Distance Geometry Graphs for Protein Structure Determination.
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XXI Latin Ibero-American Conference on Operations Research (CLAIO22).
Buenos Aires, Argentina, December 12-15, 2022.
Web site.
S.B. Hengeveld, A. Mucherino,
An Error-Tolerant Branch-and-Prune Algorithm for Distance Geometry.
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Federated Conference on Computer Science and Information Systems (FedCSIS22).
Sofia, Bulgaria, September 4-7, 2022.
Web site.
S.B. Hengeveld, A. Mucherino,
A GPU Approach to Distance Geometry in 1D: an Implementation in C/CUDA (WCO22);
On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation (AIMaViG22).
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8th Czech-Slovak International Symposium on Graph Theory, Combinatorics, Algorithms and Applications (CSGT22)
Prague, Czech Republic. July 25-29, 2022.
Web site.
A. Mucherino,
Graphs and vertex orders in Discretizable Distance Geometry.
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Discrete Math Days 20/22 (DMD22)
Santander, Spain. July 4-6, 2022.
Web site.
S.B. Hengeveld, A. Mucherino,
The Discrete Side of Distance Geometry: a Focus on the 1-dimensional Case.
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9th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO22)
Gran Canaria, Spain. June 27-30, 2022.
Web site.
D.S. Gonçalves, A. Mucherino,
A Distance Geometry Procedure using the Levenberg-Marquardt Algorithm and with Applications in Biology but not only.
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Encontro de Outono da Sociedade Brasileira de Física (EOSBF22)
São Paulo (SP), Brazil. April 10-14, 2022.
Web site.
Direct link to abstract.
S. Hengeveld, N. Rubiano da Silva, D.S. Gonçalves, P.H. Souto Ribeiro, A. Mucherino,
An Optical Processor for Matrix-by-Vector Multiplications: an Application to the Distance Geometry Problem in 1D.
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International Conference on Bioinformatics & Biomedicine (BIBM21).
Online event, December 9-12, 2021.
Web site.
S.B. Hengeveld, T. Malliavin, J.H. Lin, L. Liberti, A. Mucherino,
A Study on the Impact of the Distance Types Involved in Protein Structure Determination by NMR.
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Federated Conference on Computer Science and Information Systems (FedCSIS21).
Online event, September 2-5, 2021.
Web site.
S.B. Hengeveld, A. Mucherino,
On the Representation of Human Motions and Distance-based Retargeting.
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13th International Conference on Large-Scale Scientific Computations (LSSC21).
Sozopol, Bulgaria (partially held online), June 7-11, 2021.
Web site.
A. Mucherino,
binMeta: a New Java Package for Meta-Heuristic Searches.
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The Biophysical Society Annual Meeting (BPS21).
online, February 22-26, 2021.
Web site.
F. Cordier, B. Bardiaux, A. Mucherino, J. Idier, N. Wolff, L. Liberti, T.E. Malliavin,
Exploring Exhaustively the Conformations of a Tandem Do-Mains Protein using a Discrete Distance Geometry Approach.
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Federated Conference on Computer Science and Information Systems (FedCSIS20).
Sofia, Bulgaria (held online), September 6-9, 2020.
Web site.
A. Mucherino, D.S. Gonçalves, L. Liberti, J-H. Lin, C. Lavor, N. Maculan,
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data.
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Motion, Interaction and Games (MIG19).
Newcastle, UK, October 28-30, 2019.
Web site.
S. Hu, H.P.H. Shum, A. Mucherino,
DSPP: Deep Shape and Pose Priors of Humans.
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Federated Conference on Computer Science and Information Systems (FedCSIS19).
Leipzig, Germany, September 1-4, 2019.
Web site.
A. Mucherino, J-H. Lin,
An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data.
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XVI international conference on Algebra, Number Theory, and Discrete Geometry: Modern Problems,
Applications, and Problems of History.
Tula, Russia, May 13-18, 2019.
Web site.
A. Mucherino,
On the Manipulation of Simple Animations by dynamical Distance Geometry.
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7th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO19).
Granada, Spain, May 8-10, 2019.
Web site.
A. Mucherino, J-H. Lin, D.S. Gonçalves,
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data.
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Motion, Interaction and Games (MIG18).
Cyprus, Greece, November 8-10, 2018.
Web site.
Z. Liu, A. Mucherino, L. Hoyet, F. Multon,
Surface based Motion Retargeting by Preserving Spatial Relationship.
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Federated Conference on Computer Science and Information Systems (FedCSIS18).
Poznan, Poland, September 9-12, 2018.
Web site.
F. Elain, A. Mucherino, L. Hoyet, R. Kulpa,
Feature Selection in Time-Series Motion Databases.
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NMR Protein Determination: Theory and Methods.
Campinas, São Paulo. May 21-22, 2018.
A. Mucherino,
10 Years of Research on Discretizable Distance Geometry with Applications in Structural Biology: some Historical Facts and New Challenges.
Invited Speaker.
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GOR Distance Geometry 2017 (GOR-DG17).
Bad Honnef, Germany. November 23-24, 2017.
Web site.
A. Mucherino,
Distance Geometry, Dimensionality Reduction and Motion Adaptation.
Invited Speaker.
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Motion in Games (MIG17).
Barcelona, Spain. November 8-10, 2017.
Web site.
A. Bernardin, L. Hoyet, A. Mucherino, D.S. Gonçalves, F. Multon,
Normalized Euclidean Distance Matrices for Human Motion Retargeting.
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Geometric Science of Information (GSI17).
Paris, France. November 7-9, 2017.
Web site.
A. Mucherino, D.S. Gonçalves,
An Approach to Dynamical Distance Geometry.
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Semaine de l'Information Graphique et de la Réalité Virtuelle (IGRV17).
Rennes, France. October 23-27, 2017.
Web site.
A. Bernardin, L. Hoyet, A. Mucherino, D.S. Gonçalves, F. Multon,
Normalized Euclidean Distance Matrices for Human Motion Retargeting.
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Federated Conference on Computer Science and Information Systems (FedCSIS17).
Prague, Czech Republic, September 3-6, 2017.
Web site.
A. Mucherino, D.S. Gonçalves, A. Bernardin, L. Hoyet, F. Multon,
A Distance-Based Approach for Human Posture Simulations.
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ROADEF17.
Metz, France. February 22-24, 2017.
Web site.
J. Omer, A. Mucherino,
Integer Programming for the Search of a Discretization Order in Distance Geometry Problems.
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Federated Conference on Computer Science and Information Systems (FedCSIS16).
Gdansk, Poland, September 11-14, 2016.
Web site.
W. Gramacho, A. Mucherino, J-H. Lin, C. Lavor,
A New Approach to the Discretization of Multidimensional Scaling.
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17th International Conference on Artificial Intelligence: Methodology, Systems, Applications
(AIMSA16).
Varna, Bulgaria. September 7-9, 2016.
Web site.
S. Fidanova, O. Roeva, A. Mucherino, K. Kapanova,
InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem.
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Federated Conference on Computer Science and Information Systems (FedCSIS15).
Lodz, Poland, September 13-16, 2015.
Web site.
A. Mucherino, S. Fidanova, M. Ganzha,
Ant Colony Optimization with Environment Changes: an Application to GPS Surveying.
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10th International Conference on Large-Scale Scientific Computations (LSSC15).
Sozopol, Bulgaria. June 8-12, 2015.
Web site.
A. Mucherino,
Optimal Discretization Orders for Distance Geometry: a Theoretical Standpoint.
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3rd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO15).
Granada, Spain. April 15-17, 2015.
Web site.
A. Mucherino,
A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry.
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ROADEF15.
Marseille, France. February 25-27, 2015.
Web site.
A. Mucherino,
Discretization Orders and Distance Geometry.
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Many Faces of Distances (MFD14).
Campinas, São Paulo, Brazil. October 22-24, 2014.
Web site.
D. Gonçalves, J. Nicolas, A. Mucherino,
Searching for Optimal Orders for Discretized Distance Geometry.
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Federated Conference on Computer Science and Information Systems (FedCSIS14).
Warsaw, Poland, September 7-10, 2014.
Web site.
D. Gonçalves, A. Mucherino, C. Lavor,
An Adaptive Branching Scheme for the Branch & Prune Algorithm applied to Distance Geometry.
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20th Conference of the International Federation of Operational Research Societies (IFORS14).
Barcelona, Spain, July 13-18, 2014.
Web site.
A. Mucherino,
Molecular Distance Geometry and Atomic Orders.
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2nd International Symposium on
Uncertainty Quantification and Stochastic Modeling (Uncertainties14).
Rouen, France, June 23-27, 2014.
Web site.
D. Gonçalves, C. Lavor, A. Mucherino,
Uncertainty in the Determination of Protein Conformations from NMR data.
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INFORMS Annual Meeting (INFORMS13).
Minneapolis, USA, October 6-9, 2013.
Web site.
Two contributions:
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C. Lavor. L. Liberti, N. Maculan, A. Mucherino,
Molecular Structure Determination by a Discrete Geometric Approach.
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A. Cassioli, C. Lavor, L. Liberti, A. Mucherino,
Recent Advances on the Solution of the DMDGP.
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Federated Conference on Computer Science and Information Systems (FedCSIS13).
Krakov, Poland, September 8-11, 2013.
Web site.
D. Gonçalves, A. Mucherino, C. Lavor,
Energy-based Pruning Devices for the BP Algorithm for Distance Geometry.
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Geometric Science of Information (GSI13).
Paris, France. August 28-30, 2013.
Web site.
A. Mucherino,
On the Identification of Discretization Orders for Distance Geometry with Intervals.
The video of the presentation is available on
YouTube:
part1,
part2,
part3.
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International Conference on Continuous Optimization (ICCOPT13).
Lisbon, Portugal. July 27 - August 1, 2013.
Web site.
A. Mucherino,
Discretizing Vertex Orders for Distance Geometry.
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Workshop on Distance Geometry and Applications (DGA13).
Manaus, Amazonas, Brazil. June 24-27, 2013.
Web site.
A. Mucherino,
Discretization Orders for Distance Geometry.
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International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO13).
Granada, Spain. March 18-20, 2013.
Web site.
R. Alves, A. Cassioli, A. Mucherino, C. Lavor, L. Liberti,
The Integration of Clifford Algebra in the iBP Algorithm for the DMDGP.
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2nd International Conference on Computational Biomedicine.
Gainesville, Florida, USA. January 24-26, 2013.
Web site.
J. Seo, D-S. Kim, A. Mucherino, J-K. Kim, C. Lavor,
BetaNMR: a Beta-Complex Approach to Molecular Distance Geometry Problem.
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Ottawa Symposium on Biochemistry & Biophysics.
Ottawa, USA. October 24-25, 2012.
C. Lavor, A. Mucherino, L. Liberti,
A Geometric Approach for Solving Protein Structure by NMR.
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INFORMS Annual Meeting 2012 (INFORMS12).
Phoenix, USA. October 14-17, 2012.
Web site.
A. Cassioli, A. Mucherino, C. Lavor, L. Liberti,
On the Solution of DMDGPs with NMR data.
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Congreso Latino-Iberoamericano de Investigación Operativa (CLAIO12).
Rio de Janeiro, Brazil, September 24-28, 2012.
V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
A Discrete Approach for the Determination of Protein Structures using NMR Data.
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Federated Conference on Computer Science and Information Systems (FedCSIS12).
Wroclaw, Poland, September 9-12, 2012.
Web site.
V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
On Suitable Orders for Discretizing Molecular Distance Geometry Problems related to Protein Side Chains.
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21st International Symposium on Mathematical Programming (ISMP12).
Berlin, Germany, August 19-24, 2012.
Web site.
Two contributions:
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C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
A Discrete Approach for Solving Distance Geometry Problems related to Protein Structure.
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V. Costa, A. Mucherino, C. Lavor, L.M. Carvalho, N. Maculan,
Re-Ordering Protein Side Chains for the Discretization of MDGPs.
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International Conference on Magnetic Resonance in Biological Systems (ICMRBS12).
Lyon, France, August 19-24, 2012.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan, M. Nilges, T. Malliavin,
How a Combinatorial Reformulation of the Molecular Distance Geometry Problem Could Provide New
Perspectives for NMR Structure Determination.
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2012 SIAM Annual Meeting (SIAM12).
Minneapolis, Minnesota, USA, July 9-13, 2012.
Web site.
C. Lavor, L. Liberti, N. Maculan, A. Mucherino,
Advances on the Discretizable Distance Geometry Problem.
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Mathematics of Distances and Applications 2012 (MDA12).
Varna, Bulgaria, July 2-5, 2012.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
On the Discretization of Distance Geometry Problems.
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Global Optimization Workshop 2012 (GOW12).
Natal, Brazil, June 26-29, 2012.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
Finding Low-Energy Homopolymer Conformations by a Discrete Approach.
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Workshop on Parallel Computing and Optimization (PCO12).
Shanghai, China, May 21-25, 2012.
Web site.
W. Gramacho, A. Mucherino, C. Lavor, N. Maculan,
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem.
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ROADEF 2012.
Angers, France, April 11-13, 2012.
Web site.
M. Le Boudic-Jamin, A. Mucherino, R. Andonov,
Modeling Protein Flexibility by Distance Geometry.
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1st French-Brazilian Symposium on Biosciences (br.BIO.fr).
Paris, France, March 21, 2012.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
Discrete Approaches for Solving Molecular Distance Geometry Problems.
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Computational Structural Bioinformatics Workshop (CSBW11).
Atlanta, GA, USA, November 12-15, 2011.
A. Mucherino, C. Lavor, L. Liberti,
A Symmetry-Driven BP Algorithm for the Discretizable Molecular Distance Geometry Problem.
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Federated Conference on Computer Science and Information Systems (FedCSIS11).
Szczecin, Poland, September 18-21, 2011.
Web site.
A. Mucherino,
Extending the Definition of β-Consistent Biclustering for Feature Selection.
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10th International Conference on Modeling and Applied Simulation (MAS11).
Rome, Italy, September 12-14, 2011.
Web site.
A. Mucherino, A. Urtubia,
Feature Selection for Datasets of Wine Fermentations.
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Workshop "Data Mining in Agriculture" (DMA11).
New York City, USA, September 2, 2011.
Web site.
A. Mucherino, G. Ruß,
Recent Developments in Data Mining and Agriculture.
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5th Annual International Conference on Combinatorial Optimization and Applications (COCOA11).
Zhangjiajie, China, August 4-6, 2011.
Web site.
L. Liberti, B. Masson, J. Lee, C. Lavor, A. Mucherino,
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem.
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Conference for the International Federation of Operational Research Societies 2011 (IFORS11).
Melbourne, Australia, July 10-15, 2011.
Web site.
L. Liberti, C. Lavor, A. Mucherino,
The Mathematics of Discrete Distance Geometry.
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The Second World Congress on Global Optimization in Engineering & Science (WCGO11).
Crete, Greece, July 3-7, 2011.
Web site.
Two contributions:
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L. Liberti, C. Lavor, N. Maculan, A. Mucherino,
The Discrete Side of Distance Geometry.
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A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
Exploiting NMR Information for Solving Distance Geometry Problems.
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10th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW11).
Frascati, Rome, Italy, June 14-16, 2011.
Web site.
Two contributions:
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A. Mucherino, I. Wohlers, G.W. Klau, R. Andonov,
Sparsifying Distance Matrices for Protein-Protein Structure Alignments.
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L. Liberti, B. Masson, C. Lavor, A. Mucherino,
Branch-and-Prune Trees with Bounded Width.
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8th International Conference on Large-Scale Scientific Computations (LSSC11).
Sozopol, Bulgaria, June 6-10, 2011.
Web site.
A. Mucherino, M. Fuchs, X. Vasseur, S. Gratton,
Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics.
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7th International Symposium on Bioinformatics Research and Applications (ISBRA11).
Changsha, China, May 27-29, 2011.
Web site.
L. Liberti, C. Lavor, A. Mucherino,
An Exponential Algorithm for the Discretizable Molecular Distance Geometry Problem is Polynomial on Proteins.
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International Symposium on Experimental Algorithms (SEA11).
Crete, Greece, May 5-7, 2011.
Web site.
Download slides.
A. Mucherino, C. Lavor, T. Malliavin, L. Liberti, M. Nilges, N. Maculan,
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.
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ROADEF 2011.
Saint Etienne, France, March 2-4, 2011.
Web site.
A. Mucherino, C. Lavor, L. Liberti,
The Discretizable Molecular Distance Geometry Problem: from Ideal to Real Instances.
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International Workshop on Computational Proteomics, International Conference on Bioinformatics & Biomedicine (BIBM10).
Hong Kong, December 18-21, 2010.
Web site.
C. Lavor, L. Liberti, A. Mucherino,
On the Solution of Molecular Distance Geometry Problems with Interval Data.
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International Conference on Metaheuristics and Nature Inspired Computing (META10).
Djerba, Tunisia, October 27-31, 2010.
Web site.
A. Mucherino, L. Jourdan, E-G. Talbi,
A Heuristic for Biclustering based on a Bilevel Reformulation.
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Third International Congress on Mathematical Software (ICMS10).
Kobe, Japan, September 13-17, 2010.
Web site.
Download slides.
See video of the presentation.
A. Mucherino, L. Liberti, C. Lavor,
MD-jeep: an Implementation of a Branch & Prune Algorithm for Distance Geometry Problems.
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Toulouse Global Optimization 2010 (TOGO10).
Toulouse, France, August 31 / September 3, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
Strategies for Solving Distance Geometry Problems with Inexact Distances by Discrete Approaches.
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Workshop "Data Mining in Agriculture" (DMA10).
Berlin, Germany, July 14, 2010.
Web site.
A. Mucherino, A. Urtubia,
Consistent Biclustering and Applications to Agriculture.
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24th European Conference on Operational Research (EURO10).
Lisbon, Portugal, July 11-14, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan, T. Bonnates, G. Paillard,
Discretization of Molecular Distance Geometry Problems by Defining Artificial Orderings on the Molecule.
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International Conference on Biomedical Data & Knowledge Mining: Towards Biomarker Discovery.
Crete, Greece, July 7-9, 2010.
Web site.
A. Mucherino, A. Urtubia, L. Liberti,
Analysing Wine Fermentations by Consistent Biclustering.
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EU/MEeting 2010 (10th Anniversary of the Metaheuristics Community).
Lorient, France, June 2-4, 2010.
Web site.
A. Mucherino, S. Cafieri,
A New Heuristic Algorithm for Consistent Biclustering.
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ACS/IEEE International Conference on Computer Systems and Applications (AICCSA10).
Hammamet, Tunisia, May 16-19, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, E-G. Talbi,
A Parallel Version of the Branch & Prune Algorithm for the Molecular Distance Geometry Problem.
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Grid5000 Spring School.
Lille, France, April 6-9, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, E-G. Talbi,
On Suitable Parallel Implementations of the Branch & Prune Algorithm for Distance Geometry.
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ROADEF 2010.
Toulouse, France, February 24-26, 2010.
Web site.
A. Mucherino, C. Lavor, L. Liberti, N. Maculan,
A Discrete Approach for Finding the Conformation of Molecules from NMR Data.
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Computational Structural Bioinformatics Workshop (CSBW09).
Washington D.C., USA, November 1-4, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
An Artificial Backbone of Hydrogens for Finding the Conformation of Protein Molecules.
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International Conference on Bioinformatics and Biomedicine (ICBB09).
Venice, Italy, October 28-30, 2009.
Web site.
A. Mucherino, C. Lavor,
The Branch and Prune Algorithm for the Molecular Distance Geometry Problem with Inexact Distances.
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International Multiconference on Computer Science and Information Technology (IMCSIT09).
Mragowo, Poland, October 12-14, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
Computing Artificial Backbones of Hydrogen Atoms in order to Discover Protein Backbones.
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24th IFIP TC7 Conference on System Modelling and Optimization (IFIP09).
Buenos Aires, Argentina, July 27-31, 2009.
Web site.
C. Lavor, A. Mucherino, L. Liberti, N. Maculan,
The Discretizable Molecular Distance Geometry Problem for Instances Containing Experimental Errors.
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Genetic and Evolutionary Computation Conference (GECCO09).
Montréal, Canada, July 8-12, 2009.
Web site.
A. Mucherino, L. Liberti, C. Lavor, N. Maculan,
Comparisons between an Exact and a MetaHeuristic Algorithm for the Molecular Distance Geometry Problem.
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2nd International Symposium on Engineering Systems.
MIT, Cambridge, Massachusetts, USA, June 15-17, 2009.
Web site.
F. Marinelli, O. de Weck, D. Krob, L. Liberti, A. Mucherino,
A General Framework for Combined Module- and Scale-based Product Platform Design.
Download the slides.
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8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW09).
Paris, France, June 2-5, 2009.
Web site.
A. Mucherino, C. Lavor, N. Maculan,
The Molecular Distance Geometry Problem Applied to Protein Conformations.
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Florida Annual Meeting and Exposition 2009 (FAME09).
Orlando, Florida, USA, May 14-17, 2009.
Web site.
A. Masello, A. Mucherino, G. Christou,
Bond Valence Sum (BVS) in FE and MN Complexes: Parameters and Formula Optimization.
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24th Annual ACM Symposium on Applied Computing (SAC09).
Honolulu, Hawaii, USA, March 8-12, 2009.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
On a Discretizable Subclass of Instances of the Molecular Distance Geometry Problem.
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ROADEF 2009.
Nancy, France, Febraury 10-12, 2009.
Web site.
C. Lavor, L. Liberti, A. Mucherino, N. Maculan,
Recent Results on the Discretizable Molecular Distance Geometry Problem.
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Bioinformatics and Computational Biology in the Campania Region (BBCC08).
Avellino, Italy, December 12, 2008.
Web site.
A. Mucherino,
A Novel Approach for the Molecular Distance Geometry Problem.
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Workshop "Journée Optimeo".
Université Paris-Sud XI, Orsay, France, November 21, 2008.
Web site.
A. Mucherino,
Combinatorial Optimization for the Molecular Distance Geometry Problem.
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Workshop on Automatic Reformulation Search (ARS).
École Polytechnique, Palaiseau, France, October 31, 2008.
Web site.
A. Mucherino,
The Discretizable Distance Geometry Problem.
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8th International Conference on Cooperative Control and Optimization (CCO08).
Gainesville, Florida, USA, January 30 / February 1, 2008.
Web site.
A. Kammerdiner, A. Mucherino, P.M. Pardalos,
Application of Monkey Search Metaheuristic to Solving MAP Instances.
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Workshop on Protein Folding.
Minneapolis, Minnesota, USA, January 14-18, 2008.
Web site.
A. Mucherino,
Simulating Protein Conformations by a Geometric Model.
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Data Mining, System Analysis and Optimization in Biomedicine (Biomedicine07).
Gainesville, Florida, USA, March 28-30, 2007.
Web site.
A. Mucherino, O. Seref, P.M. Pardalos,
A Novel Meta-Heuristic: Monkey Search and Applications on a Geometric Model for Protein Folding.
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Bioinformatics and Computational Biology in the Campania Region (BBCC06).
Avellino, Italy, December 18, 2006.
Web site.
A. Mucherino,
An Ab-Initio Geometric Method for Protein Fold Simulations.
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Systems Analysis, Data Mining and Optimization in Biomedicine (Biomedicine05).
Gainesville, Florida, USA, Febraury 2-4, 2005.
Web site.
A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
Analysing Protein Structural Datasets to get Information on Protein Shapes.
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Computational Management Science (CMS).
Neuchatel, Switzerland, April 2-5, 2004.
Web site.
G. Ceci, A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
A Geometrical Approach for Protein Secondary Structure Simulations: Computational Issues.
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Unravelling Nature's Networks: from Microarray and Proteomic Analysis to Systems Biology.
Sheffield, England, July 21-22 2003.
Web site.
G. Ceci, A. Mucherino, M. D'Apuzzo, D. di Serafino, S. Costantini, A. Facchiano, G. Colonna,
Computational Issues of a Topological Approach to Protein Folding.
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